Protein ZmOrphan239
ZmOrphan239 is a protein in the Orphans family.
Information
Orphans Name: ZmOrphan239
Species: Maize
Orphans Family: Orphans
Gene Name(Synonym):
Uniprot ID: B4FG43
Subgenome: 2

Protein ZmOrphan239

ZmOrphan239 is a protein in the Orphans family.

Overview of domains present in v5 transcripts
PF00481
Zm00001eb358340_T006
Zm00001eb358340_T001
Zm00001eb358340_T002
Zm00001eb358340_T003
Zm00001eb358340_T004
Zm00001eb358340_T005
Zm00001eb358340_T007

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d011364DAPseq no logo sequence fimo position
Zm00001d011364DAPseq no logo sequence fimo position
Zm00001d011364ChIPseq no logo sequence fimo position
Zm00001d011364PChIPseq no logo sequence fimo position

Interactions where ZmOrphan239 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmOrphan239 is the target  
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There are 63 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb358340_T006 from maize genome v5

Amino Acid Sequence
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MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGEAFTFRTSYLFSLINLTP
FAITGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALS
DDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNE
HAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGEAFTFRTSYLFSLINLTP
FAITGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALS
DDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNE
HAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGEAFTFRTSYLFSLINLTP
FAITGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALS
DDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNE
HAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGEAFTFRTSYLFSLINLTP
FAITGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALS
DDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNE
HAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGEAFTFRTSYLFSLINLTP
FAITGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALS
DDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNE
HAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00481
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Nucleotide Sequence
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CATCGAAGTCAACTGTCCGTTGCAA...

GRMZM2G040642_T01 from maize genome v3


Related TFome: pUT6001

Amino Acid Sequence
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MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENL
LKHPAFIGDTKSAMSQSYKKTDADFLDTEGNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRS
DEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNEHAVAFVKD
EDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

Nucleotide Sequence
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CATCGAAGTCAACTGTCCGTTGCAA...

GRMZM2G040642_T02 from maize genome v3

Amino Acid Sequence
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MEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSQSYKKTDADFLDTEGNIHVGVG
STASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLK
QFVVADPEIQ

Nucleotide Sequence
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CTTGGATCACCTCCCCGTCCCCAAC...

Zm00001d011364_T001 from maize genome v4

Amino Acid Sequence
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MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENL
LKHPAFIGDTKSAMSQSYKKTDADFLDTEGNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRS
DEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNEHAVAFVKD
EDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

Nucleotide Sequence
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GCCTCCCTCCGCCTCCCTTGGATCA...

Zm00001eb358340_T001 from maize genome v5

Amino Acid Sequence
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MEDFYDIKSSRVDDKQINFFGVFDGEAFTFRTSYLFSLINLTPFAITGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAM
SNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSR
AFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNEHAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVV
EFCHDKMVDGSPPSTNKS

Nucleotide Sequence
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GTATAGGACACCCGCATCACTGACA...

Zm00001eb358340_T002 from maize genome v5

Amino Acid Sequence
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MEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSQSYKKTDADFLDTEGNIHVGVG
STASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLK
QFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNEHAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMV
DGSPPSTNKS

Nucleotide Sequence
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GTATAGGACACCCGCATCACTGACA...

Zm00001eb358340_T003 from maize genome v5

Amino Acid Sequence
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MEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENLLKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYV
ANVGDSRAVLSKAGKAIALSDDHKPNRSDEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEID
GDTEFLILASDGLWDVVPNEHAVAFVKDEDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

Nucleotide Sequence
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GTATAGGACACCCGCATCACTGACA...

Zm00001eb358340_T004 from maize genome v5

Amino Acid Sequence
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MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENL
LKHPAFIGDTKSAMSQSYKKTDADFLDTEGNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRS
DEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNEHAVAFVKD
EDSPEAAARKLTEIAFRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

Nucleotide Sequence
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CATCGAAGTCAACTGTCCGTTGCAA...

Zm00001eb358340_T005 from maize genome v5

Amino Acid Sequence
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MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENL
LKHPAFIGDTKSAMSQSYKKTDADFLDTEGNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRS
DEQKRIEDAGGVVVWSGTWRVGGILAMSRAFGNRLLKQFVVADPEIQ

Nucleotide Sequence
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CATCGAAGTCAACTGTCCGTTGCAA...

Zm00001eb358340_T007 from maize genome v5

Amino Acid Sequence
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MACNRGVKEQEDPSAASAAPAPAAVARARAARPPRPRSRKGLGVRHLLKPCRFLAAVQRANARVREAGEATLVAALAAAQ
KESERENEVVADVCGGWKSEDGSLNCGYSSIRGRRVNMEDFYDIKSSRVDDKQINFFGVFDGHGGTHAAGYLKQHLFENL
LKHPAFIGDTKSAMSNIHVGVGSTASTAVLIGNHLYVANVGDSRAVLSKAGKAIALSDDHKPNRSDEQKRIEDAGGVVVW
SGTWRVGGILAMSRAFGNRLLKQFVVADPEIQDLEIDGDTEFLILASDGLWDVVPNEHAVAFVKDEDSPEAAARKLTEIA
FRRGSTDNITCIVVEFCHDKMVDGSPPSTNKS

Nucleotide Sequence
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CATCGAAGTCAACTGTCCGTTGCAA...


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